Detailed information of SNP:
|
SNP ID:
sf1213455922(Gbrowse)
Chromosome: chr12 Position: 13455922 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 72.28% | 27.72% |
| All Indica | 793 | 93.06% | 6.94% |
| All Japonica | 491 | 34.83% | 65.17% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 91.96% | 8.04% |
| Indica II | 211 | 94.31% | 5.69% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 332 | 14.46% | 85.54% |
| Tropical Japonica | 92 | 90.22% | 9.78% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213455922 | T->A | INTERGENIC | None |