Detailed information of SNP:
|
SNP ID:
sf1213456024(Gbrowse)
Chromosome: chr12 Position: 13456024 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1381 | 79.07% | 20.93% |
| All Indica | 763 | 64.48% | 35.52% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 358 | 69.27% | 30.73% |
| Indica II | 209 | 64.11% | 35.89% |
| Indica Intermediate | 196 | 56.12% | 43.88% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213456024 | G->A | INTERGENIC | None |