Detailed information of SNP:
|
SNP ID:
sf1213457138(Gbrowse)
Chromosome: chr12 Position: 13457138 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1350 | 68.96% | 31.04% |
| All Indica | 760 | 49.34% | 50.66% |
| All Japonica | 474 | 96.41% | 3.59% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 351 | 48.15% | 51.85% |
| Indica II | 202 | 58.42% | 41.58% |
| Indica Intermediate | 207 | 42.51% | 57.49% |
| Temperate Japonica | 325 | 97.85% | 2.15% |
| Tropical Japonica | 87 | 93.10% | 6.90% |
| Japonica Intermediate | 62 | 93.55% | 6.45% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213457138 | G->A | INTERGENIC | None |