Detailed information of SNP:
|
SNP ID:
sf1213457299(Gbrowse)
Chromosome: chr12 Position: 13457299 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 65.05% | 34.95% |
| All Indica | 763 | 82.96% | 17.04% |
| All Japonica | 463 | 33.05% | 66.95% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 365 | 95.62% | 4.38% |
| Indica II | 196 | 59.69% | 40.31% |
| Indica Intermediate | 202 | 82.67% | 17.33% |
| Temperate Japonica | 324 | 13.89% | 86.11% |
| Tropical Japonica | 79 | 89.87% | 10.13% |
| Japonica Intermediate | 60 | 61.67% | 38.33% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213457299 | A->G | INTERGENIC | None |