Detailed information of SNP:
|
SNP ID:
sf1213474720(Gbrowse)
Chromosome: chr12 Position: 13474720 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1390 | 85.83% | 14.17% |
| All Indica | 777 | 90.09% | 9.91% |
| All Japonica | 495 | 89.29% | 10.71% |
| Aus | 62 | 32.26% | 67.74% |
| Indica I | 360 | 88.61% | 11.39% |
| Indica II | 211 | 93.36% | 6.64% |
| Indica Intermediate | 206 | 89.32% | 10.68% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 79.57% | 20.43% |
| Japonica Intermediate | 67 | 59.70% | 40.30% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213474720 | A->G | INTERGENIC | None |