Detailed information of SNP:
|
SNP ID:
sf1213475825(Gbrowse)
Chromosome: chr12 Position: 13475825 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1385 | 73.43% | 26.57% |
| All Indica | 769 | 92.07% | 7.93% |
| All Japonica | 493 | 41.38% | 58.62% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 370 | 95.41% | 4.59% |
| Indica II | 192 | 88.54% | 11.46% |
| Indica Intermediate | 207 | 89.37% | 10.63% |
| Temperate Japonica | 333 | 19.82% | 80.18% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 67 | 70.15% | 29.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213475825 | A->G | INTERGENIC | None |