Detailed information of SNP:
|
SNP ID:
sf1213483147(Gbrowse)
Chromosome: chr12 Position: 13483147 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 76.89% | 23.11% |
| All Indica | 795 | 95.85% | 4.15% |
| All Japonica | 497 | 42.66% | 57.34% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 98.40% | 1.60% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 209 | 92.82% | 7.18% |
| Temperate Japonica | 335 | 21.49% | 78.51% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213483147 | A->G | INTERGENIC | None |