Detailed information of SNP:
|
SNP ID:
sf1213521588(Gbrowse)
Chromosome: chr12 Position: 13521588 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 73.84% | 26.16% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 482 | 32.99% | 67.01% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 374 | 98.93% | 1.07% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 328 | 14.94% | 85.06% |
| Tropical Japonica | 88 | 90.91% | 9.09% |
| Japonica Intermediate | 66 | 45.45% | 54.55% |
| Group VI/Aromatic | 12 | 25.00% | 75.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213521588 | T->A | INTERGENIC | None |