Detailed information of SNP:
|
SNP ID:
sf1213523924(Gbrowse)
Chromosome: chr12 Position: 13523924 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 97.58% | 2.42% |
| All Indica | 796 | 97.99% | 2.01% |
| All Japonica | 489 | 96.73% | 3.27% |
| Aus | 63 | 98.41% | 1.59% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 83.52% | 16.48% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213523924 | C->T | INTERGENIC | None |