Detailed information of SNP:
|
SNP ID:
sf1213543118(Gbrowse)
Chromosome: chr12 Position: 13543118 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 91.32% | 8.68% |
| All Indica | 771 | 91.83% | 8.17% |
| All Japonica | 488 | 93.85% | 6.15% |
| Aus | 61 | 75.41% | 24.59% |
| Indica I | 362 | 89.78% | 10.22% |
| Indica II | 206 | 94.17% | 5.83% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 81.52% | 18.48% |
| Japonica Intermediate | 62 | 82.26% | 17.74% |
| Group VI/Aromatic | 11 | 81.82% | 18.18% |
| Intermediate | 40 | 77.50% | 22.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213543118 | A->G | INTERGENIC | None |