Detailed information of SNP:
|
SNP ID:
sf1213554110(Gbrowse)
Chromosome: chr12 Position: 13554110 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1362 | 63.44% | 36.56% |
| All Indica | 762 | 40.42% | 59.58% |
| All Japonica | 482 | 93.36% | 6.64% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 352 | 21.88% | 78.12% |
| Indica II | 208 | 69.23% | 30.77% |
| Indica Intermediate | 202 | 43.07% | 56.93% |
| Temperate Japonica | 329 | 95.74% | 4.26% |
| Tropical Japonica | 87 | 83.91% | 16.09% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213554110 | T->C | LOC_Os12g23840(LOC_Os12g23840.1) | Non-Synonymous SNP |