Detailed information of SNP:
|
SNP ID:
sf1213613943(Gbrowse)
Chromosome: chr12 Position: 13613943 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 88.24% | 11.76% |
| All Indica | 794 | 96.47% | 3.53% |
| All Japonica | 483 | 74.74% | 25.26% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 208 | 89.90% | 10.10% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 328 | 86.28% | 13.72% |
| Tropical Japonica | 88 | 32.95% | 67.05% |
| Japonica Intermediate | 67 | 73.13% | 26.87% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213613943 | G->A | INTERGENIC | None |