Detailed information of SNP:
|
SNP ID:
sf1213617899(Gbrowse)
Chromosome: chr12 Position: 13617899 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 71.31% | 28.69% |
| All Indica | 793 | 70.74% | 29.26% |
| All Japonica | 493 | 69.98% | 30.02% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 61.93% | 38.07% |
| Indica II | 213 | 78.87% | 21.13% |
| Indica Intermediate | 207 | 78.26% | 21.74% |
| Temperate Japonica | 334 | 83.83% | 16.17% |
| Tropical Japonica | 93 | 20.43% | 79.57% |
| Japonica Intermediate | 66 | 69.70% | 30.30% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213617899 | C->T | INTERGENIC | None |