Detailed information of SNP:
|
SNP ID:
sf1213650989(Gbrowse)
Chromosome: chr12 Position: 13650989 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 89.79% | 10.21% |
| All Indica | 790 | 84.30% | 15.70% |
| All Japonica | 497 | 96.18% | 3.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 56.34% | 43.66% |
| Indica Intermediate | 202 | 86.14% | 13.86% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213650989 | G->A | INTERGENIC | None |