Detailed information of SNP:
|
SNP ID:
sf1213704421(Gbrowse)
Chromosome: chr12 Position: 13704421 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1347 | 70.53% | 29.47% |
| All Indica | 741 | 86.77% | 13.23% |
| All Japonica | 487 | 40.86% | 59.14% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 343 | 86.01% | 13.99% |
| Indica II | 207 | 89.86% | 10.14% |
| Indica Intermediate | 191 | 84.82% | 15.18% |
| Temperate Japonica | 331 | 19.64% | 80.36% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 67 | 68.66% | 31.34% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213704421 | G->A | INTERGENIC | None |