Detailed information of SNP:
|
SNP ID:
sf1213707032(Gbrowse)
Chromosome: chr12 Position: 13707032 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1248 | 80.21% | 19.79% |
| All Indica | 647 | 65.22% | 34.78% |
| All Japonica | 490 | 97.96% | 2.04% |
| Aus | 61 | 85.25% | 14.75% |
| Indica I | 277 | 53.43% | 46.57% |
| Indica II | 200 | 78.00% | 22.00% |
| Indica Intermediate | 170 | 69.41% | 30.59% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 89 | 91.01% | 8.99% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 12 | 100.00% | 0.00% |
| Intermediate | 38 | 92.11% | 7.89% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213707032 | G->A | LOC_Os12g24100(LOC_Os12g24100.1) | INTRON |