Detailed information of SNP:
|
SNP ID:
sf1213712188(Gbrowse)
Chromosome: chr12 Position: 13712188 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1355 | 93.51% | 6.49% |
| All Indica | 759 | 92.49% | 7.51% |
| All Japonica | 490 | 98.78% | 1.22% |
| Aus | 55 | 63.64% | 36.36% |
| Indica I | 354 | 95.76% | 4.24% |
| Indica II | 204 | 87.75% | 12.25% |
| Indica Intermediate | 201 | 91.54% | 8.46% |
| Temperate Japonica | 332 | 98.49% | 1.51% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 65 | 98.46% | 1.54% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213712188 | C->T | LOC_Os12g24110(LOC_Os12g24110.1) | Non-Synonymous SNP |