Detailed information of SNP:
|
SNP ID:
sf1213715301(Gbrowse)
Chromosome: chr12 Position: 13715301 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1389 | 94.96% | 5.04% |
| All Indica | 773 | 93.53% | 6.47% |
| All Japonica | 494 | 96.76% | 3.24% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 362 | 93.37% | 6.63% |
| Indica II | 210 | 95.71% | 4.29% |
| Indica Intermediate | 201 | 91.54% | 8.46% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213715301 | G->A | LOC_Os12g24110(LOC_Os12g24110.1) | Non-Synonymous SNP |