Detailed information of SNP:
|
SNP ID:
sf1213722072(Gbrowse)
Chromosome: chr12 Position: 13722072 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1313 | 94.14% | 5.86% |
| All Indica | 700 | 89.71% | 10.29% |
| All Japonica | 493 | 99.39% | 0.61% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 328 | 89.63% | 10.37% |
| Indica II | 187 | 91.44% | 8.56% |
| Indica Intermediate | 185 | 88.11% | 11.89% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 96.67% | 3.33% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213722072 | A->G | LOC_Os12g24120(LOC_Os12g24120.1) | Synonymous |