Detailed information of SNP:
|
SNP ID:
sf1213727041(Gbrowse)
Chromosome: chr12 Position: 13727041 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 65.25% | 34.75% |
| All Indica | 797 | 68.38% | 31.62% |
| All Japonica | 497 | 70.62% | 29.38% |
| Aus | 67 | 5.97% | 94.03% |
| Indica I | 375 | 59.47% | 40.53% |
| Indica II | 211 | 76.30% | 23.70% |
| Indica Intermediate | 211 | 76.30% | 23.70% |
| Temperate Japonica | 335 | 83.88% | 16.12% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 70.59% | 29.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213727041 | C->T | INTERGENIC | None |