Detailed information of SNP:
|
SNP ID:
sf1213763228(Gbrowse)
Chromosome: chr12 Position: 13763228 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1326 | 97.44% | 2.56% |
| All Indica | 782 | 99.10% | 0.90% |
| All Japonica | 425 | 94.12% | 5.88% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 198 | 97.47% | 2.53% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 310 | 96.45% | 3.55% |
| Tropical Japonica | 59 | 81.36% | 18.64% |
| Japonica Intermediate | 56 | 94.64% | 5.36% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213763228 | C->G | LOC_Os12g24170(LOC_Os12g24170.1) | INTRON |