Detailed information of SNP:
|
SNP ID:
sf1213776028(Gbrowse)
Chromosome: chr12 Position: 13776028 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 86.18% | 13.82% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 496 | 71.57% | 28.43% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 85.03% | 14.97% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213776028 | C->A | LOC_Os12g24170(LOC_Os12g24170.1) | INTRON |