Detailed information of SNP:
|
SNP ID:
sf1213793351(Gbrowse)
Chromosome: chr12 Position: 13793351 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1293 | 93.74% | 6.26% |
| All Indica | 762 | 91.99% | 8.01% |
| All Japonica | 422 | 96.92% | 3.08% |
| Aus | 64 | 93.75% | 6.25% |
| Indica I | 362 | 92.54% | 7.46% |
| Indica II | 203 | 93.60% | 6.40% |
| Indica Intermediate | 197 | 89.34% | 10.66% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 43 | 76.74% | 23.26% |
| Japonica Intermediate | 45 | 93.33% | 6.67% |
| Group VI/Aromatic | 9 | 88.89% | 11.11% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213793351 | C->T | LOC_Os12g24210(LOC_Os12g24210.1) | INTRON |