Detailed information of SNP:
|
SNP ID:
sf1213794008(Gbrowse)
Chromosome: chr12 Position: 13794008 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1373 | 54.55% | 45.45% |
| All Indica | 772 | 82.64% | 17.36% |
| All Japonica | 486 | 4.73% | 95.27% |
| Aus | 63 | 84.13% | 15.87% |
| Indica I | 358 | 77.93% | 22.07% |
| Indica II | 206 | 85.92% | 14.08% |
| Indica Intermediate | 208 | 87.50% | 12.50% |
| Temperate Japonica | 327 | 2.14% | 97.86% |
| Tropical Japonica | 93 | 11.83% | 88.17% |
| Japonica Intermediate | 66 | 7.58% | 92.42% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213794008 | T->C | LOC_Os12g24210(LOC_Os12g24210.1) | INTRON |