Detailed information of SNP:
|
SNP ID:
sf1213795154(Gbrowse)
Chromosome: chr12 Position: 13795154 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1290 | 77.67% | 22.33% |
| All Indica | 690 | 74.49% | 25.51% |
| All Japonica | 487 | 79.06% | 20.94% |
| Aus | 62 | 91.94% | 8.06% |
| Indica I | 322 | 79.81% | 20.19% |
| Indica II | 190 | 70.00% | 30.00% |
| Indica Intermediate | 178 | 69.66% | 30.34% |
| Temperate Japonica | 331 | 99.09% | 0.91% |
| Tropical Japonica | 92 | 20.65% | 79.35% |
| Japonica Intermediate | 64 | 59.38% | 40.62% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 38 | 86.84% | 13.16% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213795154 | T->C | LOC_Os12g24210(LOC_Os12g24210.1) | Non-Synonymous SNP |