Detailed information of SNP:
|
SNP ID:
sf1213795313(Gbrowse)
Chromosome: chr12 Position: 13795313 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 96.12% | 3.88% |
| All Indica | 796 | 95.23% | 4.77% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 373 | 94.91% | 5.09% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213795313 | G->A | LOC_Os12g24210(LOC_Os12g24210.1) | Non-Synonymous SNP |