Detailed information of SNP:
|
SNP ID:
sf1213797312(Gbrowse)
Chromosome: chr12 Position: 13797312 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1385 | 96.25% | 3.75% |
| All Indica | 780 | 95.77% | 4.23% |
| All Japonica | 486 | 96.71% | 3.29% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 363 | 94.49% | 5.51% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 206 | 96.12% | 3.88% |
| Temperate Japonica | 333 | 99.40% | 0.60% |
| Tropical Japonica | 90 | 93.33% | 6.67% |
| Japonica Intermediate | 63 | 87.30% | 12.70% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213797312 | G->T | INTERGENIC | None |