Detailed information of SNP:
|
SNP ID:
sf1213801833(Gbrowse)
Chromosome: chr12 Position: 13801833 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 77.11% | 22.89% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 490 | 38.98% | 61.02% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 96.17% | 3.83% |
| Temperate Japonica | 332 | 19.58% | 80.42% |
| Tropical Japonica | 91 | 90.11% | 9.89% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213801833 | G->A | LOC_Os12g24220(LOC_Os12g24220.1) | Synonymous |