Detailed information of SNP:
|
SNP ID:
sf1213911222(Gbrowse)
Chromosome: chr12 Position: 13911222 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1212 | 79.95% | 20.05% |
| All Indica | 742 | 71.56% | 28.44% |
| All Japonica | 391 | 96.42% | 3.58% |
| Aus | 37 | 70.27% | 29.73% |
| Indica I | 366 | 60.38% | 39.62% |
| Indica II | 185 | 89.73% | 10.27% |
| Indica Intermediate | 191 | 75.39% | 24.61% |
| Temperate Japonica | 294 | 98.98% | 1.02% |
| Tropical Japonica | 44 | 77.27% | 22.73% |
| Japonica Intermediate | 53 | 98.11% | 1.89% |
| Group VI/Aromatic | 7 | 57.14% | 42.86% |
| Intermediate | 35 | 88.57% | 11.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213911222 | A->G | INTERGENIC | None |