Detailed information of SNP:
|
SNP ID:
sf1213927488(Gbrowse)
Chromosome: chr12 Position: 13927488 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1410 | 52.98% | 47.02% |
| All Indica | 791 | 82.17% | 17.83% |
| All Japonica | 497 | 15.09% | 84.91% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 372 | 85.48% | 14.52% |
| Indica II | 209 | 77.03% | 22.97% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 6.87% | 93.13% |
| Tropical Japonica | 94 | 23.40% | 76.60% |
| Japonica Intermediate | 68 | 44.12% | 55.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213927488 | A->T | LOC_Os12g24410(LOC_Os12g24410.1) | INTRON |