Detailed information of SNP:
|
SNP ID:
sf1213928154(Gbrowse)
Chromosome: chr12 Position: 13928154 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1395 | 92.69% | 7.31% |
| All Indica | 794 | 99.24% | 0.76% |
| All Japonica | 481 | 81.29% | 18.71% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 209 | 99.52% | 0.48% |
| Temperate Japonica | 331 | 86.40% | 13.60% |
| Tropical Japonica | 82 | 60.98% | 39.02% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213928154 | C->T | LOC_Os12g24410(LOC_Os12g24410.1) | Non-Synonymous SNP |