Detailed information of SNP:
|
SNP ID:
sf1213929427(Gbrowse)
Chromosome: chr12 Position: 13929427 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 92.26% | 7.74% |
| All Indica | 791 | 94.44% | 5.56% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 65 | 29.23% | 70.77% |
| Indica I | 369 | 91.60% | 8.40% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213929427 | A->G | LOC_Os12g24410(LOC_Os12g24410.1) | Synonymous |