Detailed information of SNP:
|
SNP ID:
sf1213932842(Gbrowse)
Chromosome: chr12 Position: 13932842 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 92.12% | 7.88% |
| All Indica | 795 | 98.49% | 1.51% |
| All Japonica | 472 | 80.72% | 19.28% |
| Aus | 62 | 95.16% | 4.84% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 209 | 96.17% | 3.83% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 320 | 90.00% | 10.00% |
| Tropical Japonica | 86 | 46.51% | 53.49% |
| Japonica Intermediate | 66 | 80.30% | 19.70% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213932842 | G->T | INTERGENIC | None |