Detailed information of SNP:
|
SNP ID:
sf1213933457(Gbrowse)
Chromosome: chr12 Position: 13933457 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1351 | 95.11% | 4.89% |
| All Indica | 792 | 98.74% | 1.26% |
| All Japonica | 440 | 89.55% | 10.45% |
| Aus | 64 | 92.19% | 7.81% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 310 | 94.52% | 5.48% |
| Tropical Japonica | 66 | 65.15% | 34.85% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213933457 | A->G | INTERGENIC | None |