Detailed information of SNP:
|
SNP ID:
sf1213933599(Gbrowse)
Chromosome: chr12 Position: 13933599 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 51.86% | 48.14% |
| All Indica | 756 | 41.14% | 58.86% |
| All Japonica | 492 | 63.82% | 36.18% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 347 | 26.22% | 73.78% |
| Indica II | 210 | 65.71% | 34.29% |
| Indica Intermediate | 199 | 41.21% | 58.79% |
| Temperate Japonica | 334 | 81.44% | 18.56% |
| Tropical Japonica | 91 | 18.68% | 81.32% |
| Japonica Intermediate | 67 | 37.31% | 62.69% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213933599 | C->G | INTERGENIC | None |