Detailed information of SNP:
|
SNP ID:
sf1213935695(Gbrowse)
Chromosome: chr12 Position: 13935695 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1388 | 97.55% | 2.45% |
| All Indica | 773 | 96.25% | 3.75% |
| All Japonica | 493 | 98.99% | 1.01% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 358 | 95.53% | 4.47% |
| Indica II | 209 | 98.09% | 1.91% |
| Indica Intermediate | 206 | 95.63% | 4.37% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 95.65% | 4.35% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213935695 | A->G | INTERGENIC | None |