Detailed information of SNP:
|
SNP ID:
sf1213940509(Gbrowse)
Chromosome: chr12 Position: 13940509 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1367 | 93.42% | 6.58% |
| All Indica | 763 | 94.63% | 5.37% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 57 | 45.61% | 54.39% |
| Indica I | 364 | 98.63% | 1.37% |
| Indica II | 198 | 89.90% | 10.10% |
| Indica Intermediate | 201 | 92.04% | 7.96% |
| Temperate Japonica | 333 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 69.23% | 30.77% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213940509 | T->C | INTERGENIC | None |