Detailed information of SNP:
|
SNP ID:
sf1213940524(Gbrowse)
Chromosome: chr12 Position: 13940524 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1279 | 67.47% | 32.53% |
| All Indica | 682 | 51.61% | 48.39% |
| All Japonica | 490 | 96.94% | 3.06% |
| Aus | 59 | 8.47% | 91.53% |
| Indica I | 310 | 64.84% | 35.16% |
| Indica II | 196 | 31.63% | 68.37% |
| Indica Intermediate | 176 | 50.57% | 49.43% |
| Temperate Japonica | 330 | 97.58% | 2.42% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 36 | 72.22% | 27.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213940524 | C->G | INTERGENIC | None |