Detailed information of SNP:
|
SNP ID:
sf1213952431(Gbrowse)
Chromosome: chr12 Position: 13952431 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 90.59% | 9.41% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 492 | 78.86% | 21.14% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 87.35% | 12.65% |
| Tropical Japonica | 92 | 47.83% | 52.17% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213952431 | T->A | LOC_Os12g24450(LOC_Os12g24450.1) | INTRON |