Detailed information of SNP:
|
SNP ID:
sf1213980346(Gbrowse)
Chromosome: chr12 Position: 13980346 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 96.91% | 3.09% |
| All Indica | 796 | 98.87% | 1.13% |
| All Japonica | 472 | 92.80% | 7.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 314 | 91.72% | 8.28% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 65 | 93.85% | 6.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1213980346 | T->C | INTERGENIC | None |