Detailed information of SNP:
|
SNP ID:
sf1214003752(Gbrowse)
Chromosome: chr12 Position: 14003752 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1411 | 91.50% | 8.50% |
| All Indica | 798 | 98.25% | 1.75% |
| All Japonica | 491 | 82.08% | 17.92% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 333 | 89.49% | 10.51% |
| Tropical Japonica | 90 | 55.56% | 44.44% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 80.49% | 19.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214003752 | C->T | INTERGENIC | None |