Detailed information of SNP:
|
SNP ID:
sf1214005774(Gbrowse)
Chromosome: chr12 Position: 14005774 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1378 | 96.01% | 3.99% |
| All Indica | 793 | 98.87% | 1.13% |
| All Japonica | 466 | 92.49% | 7.51% |
| Aus | 64 | 90.62% | 9.38% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 208 | 96.63% | 3.37% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 328 | 95.12% | 4.88% |
| Tropical Japonica | 75 | 82.67% | 17.33% |
| Japonica Intermediate | 63 | 90.48% | 9.52% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214005774 | C->T | INTERGENIC | None |