Detailed information of SNP:
|
SNP ID:
sf1214020112(Gbrowse)
Chromosome: chr12 Position: 14020112 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1400 | 72.43% | 27.57% |
| All Indica | 792 | 91.67% | 8.33% |
| All Japonica | 485 | 37.73% | 62.27% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 94.61% | 5.39% |
| Indica II | 212 | 87.26% | 12.74% |
| Indica Intermediate | 209 | 90.91% | 9.09% |
| Temperate Japonica | 330 | 20.91% | 79.09% |
| Tropical Japonica | 91 | 81.32% | 18.68% |
| Japonica Intermediate | 64 | 62.50% | 37.50% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214020112 | G->T | INTERGENIC | None |