Detailed information of SNP:
|
SNP ID:
sf1214066231(Gbrowse)
Chromosome: chr12 Position: 14066231 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 79.41% | 20.59% |
| All Indica | 748 | 82.09% | 17.91% |
| All Japonica | 495 | 75.96% | 24.04% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 333 | 72.97% | 27.03% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 202 | 89.11% | 10.89% |
| Temperate Japonica | 333 | 84.68% | 15.32% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214066231 | G->T | INTERGENIC | None |