Detailed information of SNP:
|
SNP ID:
sf1214069223(Gbrowse)
Chromosome: chr12 Position: 14069223 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 75.88% | 24.12% |
| All Indica | 794 | 95.84% | 4.16% |
| All Japonica | 497 | 40.24% | 59.76% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 371 | 98.11% | 1.89% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 21.19% | 78.81% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 67.65% | 32.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214069223 | G->A | INTERGENIC | None |