Detailed information of SNP:
|
SNP ID:
sf1214073021(Gbrowse)
Chromosome: chr12 Position: 14073021 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 75.76% | 24.24% |
| All Indica | 788 | 75.76% | 24.24% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 368 | 64.40% | 35.60% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 207 | 82.61% | 17.39% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214073021 | C->T | LOC_Os12g24600(LOC_Os12g24600.1) | Synonymous |