Detailed information of SNP:
|
SNP ID:
sf1214077058(Gbrowse)
Chromosome: chr12 Position: 14077058 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 89.06% | 10.94% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 495 | 76.77% | 23.23% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 85.37% | 14.63% |
| Tropical Japonica | 92 | 45.65% | 54.35% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214077058 | C->T | LOC_Os12g24610(LOC_Os12g24610.1) | Synonymous |