Detailed information of SNP:
|
SNP ID:
sf1214090508(Gbrowse)
Chromosome: chr12 Position: 14090508 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 89.40% | 10.60% |
| All Indica | 798 | 97.87% | 2.13% |
| All Japonica | 494 | 76.72% | 23.28% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 93.87% | 6.13% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 332 | 85.84% | 14.16% |
| Tropical Japonica | 94 | 43.62% | 56.38% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214090508 | T->A | INTERGENIC | None |