Detailed information of SNP:
|
SNP ID:
sf1214090513(Gbrowse)
Chromosome: chr12 Position: 14090513 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1332 | 80.18% | 19.82% |
| All Indica | 715 | 63.50% | 36.50% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 57.18% | 42.82% |
| Indica II | 189 | 80.95% | 19.05% |
| Indica Intermediate | 185 | 57.30% | 42.70% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214090513 | T->C | INTERGENIC | None |