Detailed information of SNP:
|
SNP ID:
sf1214105050(Gbrowse)
Chromosome: chr12 Position: 14105050 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 96.47% | 3.53% |
| All Indica | 798 | 99.50% | 0.50% |
| All Japonica | 496 | 90.73% | 9.27% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 334 | 88.62% | 11.38% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1214105050 | C->T | INTERGENIC | None |